Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1574-snap_masked-AIE_1-5050 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1575-snap_masked-BBM_6-7010 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1576-snap_masked-BBM_6-7010 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1577-snap_masked-AQA_4-7171 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1578-snap_masked-CQS_4-6447 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1579-snap_masked-BMB_1-4633 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1580-snap_masked-CDT_2-5211 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1581-snap_masked-CDT_2-5211 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1582-snap_masked-CDT_2-5331 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1583-snap_masked-ABB_5-4847 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1588-snap_masked-YCO-8921 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1589-snap_masked-BVG_4-25625 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1590-snap_masked-CPQ_4-15250 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1591-snap_masked-CQA_6-8135 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1592-snap_masked-YCL-7822 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |