Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1559-maker-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1560-maker-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1561-maker-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1562-maker-ACL_7-7535 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1563-maker-CQB_6-11660 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1564-maker-CQS_4-6420 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1565-maker-AQA_4-7358 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1566-maker-AQD_4-6575 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1567-maker-CGV_3-7506 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1568-maker-AHL_3-8012 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1569-maker-YBL-9938 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1570-maker-CPQ_4-15272 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1571-snap_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 1572-snap_masked-CFC_2-43056 | NA | NA | NA | NA | Accessory | HGT | Torulaspora microellipsoides | Torulaspora microellipsoides FYBL01000004 |
| 1573-snap_masked-CPK_4-16846 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |