Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1544-maker-BAP_7-6884 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1545-maker-AMH_5-6251 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1546-maker-CPG_1-7609 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1547-maker-YCY-8126 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1548-maker-CPL_4-15494 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1549-maker-CDT_2-5317 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1550-maker-CKN_4-32870 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1551-maker-CMT_8-15862 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1552-maker-AQA_4-7239 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1553-maker-CGD_5-5418 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1554-maker-CMQ_8-5693 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1555-maker-CMQ_8-5693 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1556-maker-AVB_8-8045 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1557-maker-ATH_3-9260 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1558-maker-ANH_4-5663 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |