Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1529-maker-ALI_5-15225 | NA | NA | NA | NA | Accessory | HGT | NA | Lachancea thermotolerans CBS 6340 chr B |
| 1530-maker-BAM_7-7205 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1531-maker-CGD_5-5416 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 1532-maker-CCR_1-6225 | NA | NA | NA | NA | Accessory | candidate HGT | Schizosaccharomyces sp. | S.paradoxus mitochondrion /S. eubayanus/ T. delbrueckii mithocondrion |
| 1533-maker-ASC_6-27146 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1534-maker-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1535-maker-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1536-maker-BDM_5-23139 | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 1537-maker-YCY-8051 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 1538-maker-YCY-8051 | NA | NA | NA | NA | Accessory | Unknown | S. mikatae | NA |
| 1539-maker-CIL_2-24097 | NA | NA | NA | NA | Accessory | Unknown | S. paradoxus | NA |
| 1540-maker-CPR_4-17794 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1541-maker-BEN_7-20201 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1542-maker-BDM_5-23139 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 1543-maker-YCB-8071 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |