Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 143-augustus_masked-175-YCE | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 144-augustus_masked-182-ABQ_6 | NA | NA | NA | NA | Accessory | Unknown | NA | NA |
| 145-augustus_masked-1903-CLC_4 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 146-augustus_masked-1981-YCU | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 147-augustus_masked-1985-AID_2 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 148-augustus_masked-1999-AID_2 | NA | NA | NA | NA | Accessory | Ancestral | NA | NA |
| 149-augustus_masked-2075-ARN_6 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 150-augustus_masked-2075-ARN_6 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 151-augustus_masked-2075-ARN_6 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 152-augustus_masked-2075-ARN_6 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 153-augustus_masked-2075-ARN_6 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 154-augustus_masked-2075-ARN_6 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 155-augustus_masked-2075-ARN_6 | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | Torulaspora delbrueckii CBS 1146 chr3 |
| 156-augustus_masked-2151-BRV_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |
| 157-augustus_masked-2154-BRV_4 | NA | NA | NA | NA | Accessory | Introgression | S. paradoxus | NA |