Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
A searchable table of the S. cerevisiae pangenome ORFs defined in Peter et al. (2018) Nature (LINK) is provided below. The listed core/accessory classification and origin assignment are based on the original study. Click on the PanORF ID to find out the detailed presence/absence pattern of the corresponding pangenome ORF in both ScRAPdb and the 1002ScGP strain collections (which were recalculated by ScRAPdb).
| PanORF ID | SGD systematic Name | SGD standard name | Alias | Description | Type | Origin assignment | Mostly likely origin species | NCBI megablast hit |
|---|---|---|---|---|---|---|---|---|
| 1-EC1118_1F14_0012g | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | NA |
| 2-EC1118_1F14_0023g | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 3-EC1118_1F14_0034g | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | NA |
| 4-EC1118_1F14_0045g | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 5-EC1118_1F14_0056g | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | NA |
| 6-EC1118_1F14_0078g | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | NA |
| 7-EC1118_1F14_0089g | NA | NA | NA | NA | Accessory | HGT | Torulaspora delbrueckii | NA |
| 8-EC1118_1F14_0100g | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | NA |
| 9-EC1118_1F14_0111g | NA | NA | NA | NA | Accessory | HGT | Torulaspora sp. | NA |
| 10-EC1118_1F14_0133g | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 11-EC1118_1F14_0144g | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 12-EC1118_1F14_0155g | NA | NA | NA | NA | Accessory | HGT | NA | NA |
| 13-EC1118_1N26_0012g | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 14-EC1118_1N26_0023g | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |
| 15-EC1118_1N26_0034g | NA | NA | NA | NA | Accessory | HGT | Zygosaccharomyces bailii | Zygosaccharomyces parabailii ATCC60483 chr2 |