Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
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Strains
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Pangenome
Assembly quality assessment
Average nucleotide identity
Genome content variation
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Pairwise strain correlation
Panproteome
Single gene query
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Principal component analysis
Pairwise strain correlation
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Principal component analysis
Pairwise strain correlation
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Query sequence
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DNA
Protein
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Note: Deselect 'pangenome ORFs' before selecting assemblies.
pangenome ORFs
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Parameters
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blastn
tblastx
tblastn
blastp
Sensitivity
Highly similar sequences (megablast)
Somewhat similar sequences (blastn)
Short sequence (blastn-short)
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Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)
Saccharomyces cerevisiae Reference Assembly Panel Database (ScRAPdb)